References
1. Liu, B., & Pop,M.
((2009)).
ARDB—antibiotic resistance genes database..
Nucleic Acids Research
37.
D443
- D447.
2. Viola, C., & DeVincent,SJ.
((2006)).
Overview of issues pertaining to the manufacture, distribution, and use of antimicrobials in animals and other information relevant to animal antimicrobial use data collection in the United States..
Preventive Veterinary Medicine
73.
111
- 131.
3. O’Neill,J.
((2014)).
Antimicrobial resistance: Tackling a crisis for the health and wealth of nations, Review on Antimicrobial Resistance.
6.
4. Van Boeckel, TP., Brower, C., Gilbert, M., Grenfell, BT., Levin, SA., Robinson, TP., Teillant, A., & Laxminarayan,R.
((2015)).
Global trends in antimicrobial use in food animals..
Proceedings of the National Academy of Sciences
112.
5649
- 5654.
5. Chantziaras, I., Boyen, F., Callens, B., & Dewulf,J.
((2014)).
Correlation between veterinary antimicrobial use and antimicrobial resistance in food-producing animals: A report on seven countries..
Journal of Antimicrobial Chemotherapy
69.
827
- 834.
6. He, L-Y., Ying, G-G., Liu, Y-S., Su, H-C., Chen, J., Liu, S-S., & Zhao,J-L.
((2016)).
Discharge of swine wastes risks water quality and food safety: Antibiotics and antibiotic resistance genes from swine sources to the receiving environments..
Environment International
92.
210
- 219.
7. Mu, Q., Li, J., Sun, Y., Mao, D., Wang, Q., & Luo,Y.
((2015)).
Occurrence of sulfonamide-, tetracycline-, plasmidmediated quinolone-and macrolide-resistance genes in livestock feedlots in Northern China..
Environmental Science and Pollution Research
22.
6932
- 6940.
8. Pu, Q., Zhao, L-X., Li, Y-T., & Su,J-Q.
((2020)).
Manure fertilization increase antibiotic resistance in soils from typical greenhouse vegetable production bases, China..
Journal of Hazardous Materials
391.
122267.
9. Chee, Sanford JC., Mackie, RI., Koike, S., Krapac, IG., Lin, YF., Yannarell, AC., Maxwell, S., & Aminov,RI.
((2009)).
Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste..
Journal of Environmental Quality
38.
1086
- 1108.
10. Forsberg, KJ., Reyes, A., Wang, B., Selleck, EM., Sommer, MO., & Dantas,G.
((2012)).
The shared antibiotic resistome of soil bacteria and human pathogens..
Science
337.
1107
- 1111.
11. Zhao, Y., Yang, QE., Zhou, X., Wang, F-H., Muurinen, J., Virta, MP., Brandt, KK., & Zhu,Y-G.
((2021)).
Antibiotic resistome in the livestock and aquaculture industries: Status and solutions..
Critical Reviews in Environmental Science and Technology
51.
2159
- 2196.
12. Burch, TR., Stokdyk, JP., Firnstahl, AD., Kieke, Jr BA., Cook, RM., Opelt, SA., Spencer, SK., Durso, LM., & Borchardt,MA.
((2022)).
Microbial source tracking and land use associations for antibiotic resistance genes in private wells influenced by human and livestock fecal sources..
Journal of Environmental Quality
13. Li, W., Su, H., Cao, Y., Wang, L., Hu, X., Xu, W., Xu, Y., Li, Z., & Wen,G.
((2020)).
Antibiotic resistance genes and bacterial community dynamics in the seawater environment of Dapeng Cove, South China..
Science of The Total Environment
723.
138027.
14. An, X-L., Chen, Q-L., Zhu, D., Zhu, Y-G., Gillings, MR., & Su,J-Q.
((2018)).
Impact of wastewater treatment on the prevalence of integrons and the genetic diversity of integron gene cassettes..
Applied and Environmental Microbiology
84.
e02766
- 17.
15. Krauland, MG., Marsh, JW., Paterson, DL., & Harrison,LH.
((2009)).
Integron-mediated multidrug resistance in a global collection of nontyphoidal Salmonella enterica isolates..
Emerging Infectious Diseases
15.
388.
16. Blake, KS., Choi, J., & Dantas,G.
((2021)).
Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria..
Cellular and Molecular Life Sciences
78.
2585
- 2606.
17. Yang, Y., Li, B., Ju, F., & Zhang,T.
((2013)).
Exploring variation of antibiotic resistance genes in activated sludge over a four-year period through a metagenomic approach..
Environmental Science & Technology
47.
10197
- 10205.
18. Crossette, E., Gumm, J., Langenfeld, K., Raskin, L., Duhaime, M., & Wigginton,K.
((2021)).
Metagenomic quantification of genes with internal standards..
MBio
12.
e03173
- e03220.
19. Li, B., Yang, Y., Ma, L., Ju, F., Guo, F., Tiedje, J M., & Zhang,T.
((2015)).
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes..
The ISME Journal
9.
2490
- 2502.
20. Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner,FO.
((2012)).
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools..
Nucleic Acids Research
41.
D590
- D596.
21. Rognes, T., Flouri, T., Nichols, B., Quince, C., & Mahé,F.
((2016)).
VSEARCH: A versatile open source tool for metagenomics..
PeerJ
4.
e2584.
22. Schloss, PD., Westcott, SL., Ryabin, T., Hall, JR., Hartmann, M., Hollister, EB., Lesniewski, RA., Oakley, BB., Parks, DH., & null,null.
((2009)).
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities..
Applied and Environmental Microbiology
75.
7537
- 7541.
23. Jang, HM., Kim, YB., Choi, S., Lee, Y., Shin, SG., Unno, T., & Kim,YM.
((2018)).
Prevalence of antibiotic resistance genes from effluent of coastal aquaculture, South Korea..
Environmental Pollution
233.
1049
- 1057.
24. Jechalke, S., Heuer, H., Siemens, J., Amelung, W., & Smalla,K.
((2014)).
Fate and effects of veterinary antibiotics in soil..
Trends in Microbiology
22.
536
- 545.
25. Song, L., Jiang, G., Wang, C., Ma, J., & Chen,H.
((2022)).
Effects of antibiotics consumption on the behavior of airborne antibiotic resistance genes in chicken farms..
Journal of Hazardous Materials
129288.
26. Byrne-Bailey, K., Gaze, W., Kay, P., Boxall, A., Hawkey, P., & Wellington,E.
((2009)).
Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom..
Antimicrobial Agents and Chemotherapy
53.
696
- 702.
27. Mao, D., Yu, S., Rysz, M., Luo, Y., Yang, F., Li, F., Hou, J., Mu, Q., & Alvarez,P.
((2015)).
Prevalence and proliferation of antibiotic resistance genes in two municipal wastewater treatment plants..
Water Research
85.
458
- 466.
28. Speldooren, V., Heym, B., Labia, R., & Nicolas-Chanoine,M-H.
((1998)).
Discriminatory detection of inhibitorresistant β-lactamases in Escherichia coli by singlestrand conformation polymorphism-PCR..
Antimicrobial Agents and Chemotherapy
42.
879
- 884.
29. Henriques, IS., Fonseca, F., Alves, A., Saavedra, MJ., & Correia,A.
((2006)).
Occurrence and diversity of integrons and β-lactamase genes among ampicillin-resistant isolates from estuarine waters..
Research in Microbiology
157.
938
- 947.
30. Pei, R., Kim, S-C., Carlson, KH., & Pruden,A.
((2006)).
Effect of river landscape on the sediment concentrations of antibiotics and corresponding antibiotic resistance genes (ARG)..
Water Research
40.
2427
- 2435.
31. Park, CH., Robicsek, A., Jacoby, GA., Sahm, D., & Hooper,DC.
((2006)).
Prevalence in the United States of aac(6′) -Ib-cr encoding a ciprofloxacin-modifying enzyme..
Antimicrobial Agents and Chemotherapy
50.
3953
- 3955.
32. Knapp, CW., Dolfing, J., Ehlert, PA., & Graham,DW.
((2010)).
Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940..
Environmental Science & Technology
44.
580
- 587.
33. Luo, Y., Mao, D., Rysz, M., Zhou, Q., Zhang, H., Xu, L., & JJ Alvarez,P.
((2010)).
Trends in antibiotic resistance genes occurrence in the Haihe River, China..
Environmental Science & Technology
44.
7220
- 7225.
34. Goldstein, C., Lee, MD., Sanchez, S., Hudson, C., Phillips, B., Register, B., Grady, M., Liebert, C., Summers, AO., & White,DG.
((2001)).
Incidence of class 1 and 2 integrases in clinical and commensal bacteria from livestock, companion animals, and exotics..
Antimicrobial Agents and Chemotherapy
45.
723
- 726.